Calculate Serial Interval Probability Matrix

Creates a matrix of probabilities based on the serial interval distribution for all pairwise day differences.

Usage

calculate_si_probability_matrix(day_diffs, si_mean, si_sd, si_dist)

Arguments

day_diffs

Matrix of day differences between each pair of cases

si_mean

Mean of the serial interval distribution

si_sd

Standard deviation of the serial interval distribution

si_dist

Distribution type ("gamma" or "normal")

Value

Matrix of serial interval probabilities