Likelihood function for fitting SEIR model to daily case data

Likelihood function for fitting SEIR model to daily case data

likelihood_func(x, t, data, params, init, stochastic = FALSE)

Arguments

x	vector of parameters to fit
t	vector of time points
data	real data to fit model to
params	list of parameters values for input into SEIR model
init	named vector of initial conditions for each model compartment
stochastic	logical, if TRUE, a stochastic model is fit to the data otherwise a deterministic model is used.